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BioGem tools

This BioGem Bioinformatics tool contains both online and offline tools. Online tools are accessible through the local server, whereas offline tools are downloadable for free from this server or other open-source servers.

Online tools

CFSSP Server – Chou & Fasman Secondary Structure Prediction Server (biogem.org/cf)
Nussinov Algorithm – RNA Secondary Structure Prediction Server (biogem.org/ns)
S2Spred – Protein Sequence to Structure Prediction Server (biogem.org/s2s)
bpBLAST – (BioPerl BLAST) RemoteBLAST Server of BioPerl (biogem.org/bpb)
Online DSSP – Secondary Structure Assignments of PDB (biogem.org/dsp)
AA-Prop – Protein Physicochemical Properties Prediction tool (biogem.org/aa)
SeqPF – Sequence Pattern Finder tool (biogem.org/pf)
PDBcle – PDB chain & ligand extractor tool (biogem.org/cle)
rDotPlot – Interactive DotPlot tool using R (biogem.org/dp)
PDBms – Interactive PDB file splitter and molecular viewer (biogem.org/ms)


BLASTphp – PHP wrapper for NCBI BLAST URL API (biogem.org/bp)
xmlBLASTparser – PHP library for parsing NCBI BLAST XML output (biogem.org/xbp)
locBLAST – PHP wrapper for NCBI BLAST+ tool (biogem.org/lb)

Offline tools

GSA v1.0 – A Global Sequence Alignment Tool (biogem.org/gsa)
cfPred – CUI Protein Secondary Structure Predictor (biogem.org/cfp)

Other tools

FindUrIP – Finds Your Public IP Address (biogem.org/ip)
L-IP – Finds Your Local IP Address (biogem.org/lip)
URL2IP – Finds IP Address of the Domain Name (biogem.org/url)
C-Count v2.0 – Character, Word, Sentence and Paragraph Counter (biogem.org/cc2)
TNEB – Tamil Nadu Electricity Bill Calculator (biogem.org/eb)
EN2TL – English to Tamil Typing (biogem.org/ta)
EN2ML – English to Malayalam Typing (biogem.org/ml or conv.ml)
EN2HI – English to Hindi Typing (biogem.org/hi)
EN2HI Trans – Hindi to English Translation (biogem.org/hit)
RNR-Numb – Reference Number Renumbering Tool (biogem.org/rnr)
YT[AV]DL – YouTube Audio/Video Downloader (biogem.org/yt)
BGTFM – Tamil FM Player (biogem.org/fm)


PDTDB – Phytochemical and Drug Target DataBase (biogem.org/pdt)